Publications with Bioras references

The publications below are a partial list of references citing the Bioras software products LabTrack 2D and 3D. If you would like to include your research paper to this list, please send the reference to info@bioras.com

LabTrack, LabTrack3D

Bagøien, E. and T. Kiørboe (2005). Blind dating – mate finding in planktonic copepods. I. Tracking the pheromone trail of Centropages typicus. Mar. Ecol. Prog. Ser. 300: 105-115

Bagøien, E. and T. Kiørboe (2005). Blind dating – mate finding in planktonic copepods. III. Hydromechanica communication in Acartia tonsa. Mar. Ecol. Prog. Ser. 300:129-133

Blackburn N. (2003) “Measuring chemotaxis” in Madigan M.T., Martinko J.M., Parker J. (2003) Brock, Biology of Microorganisms.

Blackburn N., Fenchel T. (1999) Influence of bacteria, diffusion and shear on micro-scale nutrient patches, and implications for bacterial chemotaxis. Marine Ecology-Progress Series 189: 1-7

Blackburn N., Fenchel T., Mitchell J. (1998) Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria. Science 282: 2254-2256

Boakes D., Codling E.A., Thorn G.J.,  Steinke M. (2010) Analysis and modelling of swimming behaviour in Oxyrrhis marina. J. Plankton Res. 33 (4): 641-649.  doi:10.1093/plankt/fbq136

Christensen-Dalsgaard K.K.; Fenchel T. (2004) Complex Flagellar Motions and Swimming Patterns of the Flagellates Paraphysomonas vestita and Pteridomonas danica. Protist, Volume 155, Number 1, 1 March 2004, pp. 79-87(9)

Dur G, Souissi S, Schmitt F, Cheng S-H, Hwang J-S (2010) The different aspects in motion of the three reproductive stages of /Pseudodiaptomus annandalei/ (Copepoda, Calanoida). J. Plankton Res. 32: 423-440

Dur G., Souissi S, Schmitt F., Beyrend-Dur D., Cheng S.H. & Hwang J.S. (2011) Mating and mate choice in Pseudodiaptomus annandalei (Copepoda, Calanoida). Journal of Experimental Marine Biology and Ecology. 402:1-11

Dur G., Souissi S., Schmitt F.G., Michalec F.-G, Mahjoub M.-S., Hwang J.-S. (2011) Effects of animal density, volume, and the use of 2D/3D recording on behavioral studies of copepods. Hydrobiologia. 666:197-214

Fenchel T. (2004) Orientation in two dimensions: chemosensory motile behaviour of Euplotes vannus. European Journal of Protistology 40: 49–55 

Fenchel T., Blackburn N. (1999) Motile chemosensory behaviour of phagotrophic protists: Mechanisms for efficiency in congregating at food particles. Protist 150: 325-336 http://www.sciencedirect.com/science/article/pii/S1434461099700337

Fenchel, T. (2001) Eppur si muove: many water column bacteria are motile. Aquatic Microbial Ecology 24 197 – 201 http://www.int-res.com/articles/ame/24/a024p197.pdf

Fenchel, T. (2001) How dinoflagellates swim. Protist 152 329 – 338

Goetze E. (2008) Heterospecific mating and partial prezygotic reproductive isolation in the planktonic marine copepods Centropages typicus and Centropages hamatus. Limnology and oceanography vol. 53 (2): 433-445

Green, S., A.W. Visser, J. Titelman & T. Kiørboe, 2003. Escape responses of copepod nauplii in the flow field of the blue mussel, Mytilus edulis. Mar. Biol., 142: 727-733

Hale M., Mitchell J.G. (2001) Motion of Submicrometer Particles Dominated by Brownian Motion near Cell and Microfabricated Surfaces. Nano Letters 1 (11) 617–623

Hale M.S., Mitchell J.G. (2001) Functional morphology of diatom frustules microstructures: hydrodynamic control of Brownian particle diffusion and advection. Aquat Microb Ecol 24: 287–295

Hansen B.W., Jakobsen H.H., Andersen A., Almeda R., Pedersen T. M., Christensen A. M.,Nilsson B. (2010) Swimming behavior and prey retention of the polychaete larvae Polydora ciliate (Johnston) The Journal of Experimental Biology 213: 3237-3246

Hansson L.J., Kiørboe T. (2006) Prey-specific encounter rates and handling ambush-feeding hydromedusae. Limnol. Oceanogr., 51(4): 1849–1858

Holste L. (2010) The Impact of Key Environmental Factors on the Vital Rates of two Baltic Sea Copepods. PhD thesis, University of Hamburg

Hsu C.-Y (2008) Analysis of interactive patterns between copepods and ciliates using indicators and data mining techniques. Master thesis, Marine Environment and Engineering, University of Taiwan

Jakobsen H.H., Halvorsen E., Winding Hansen B., Visser A.W. (2005) Effects of prey motility and concentration on feeding in Acartia tonsa and Temora longicornis: the importance of feeding modes. Journal of Plankton Research 27: 775-785

Jakobsen H.H., Everett L. M., Strom S. L. (2006) Hydromechanical signaling between the ciliate Mesodinium pulex and motile protist prey. Aquat Microb Ecol 44: 197–206

Johansen J.E., Pinhassi, J., Blackburn, N., Zweifel, U.L., Hagström Å. (2002) Viability in motility characteristics among marine bacteria. Aquatic Microbial Ecology 28: 229-237

Kiørboe T. (2008) Optimal swimming strategies in mate-searching pelagic copepods. Oecologia 155: 179-192

Kiørboe, T,. E. Bagøien and U.H. Thygesen (2005). Blind dating – mate finding in planktonic copepods. II. The pheromone cloud of Pseudocalanus elongatus. Mar. Ecol. Prog. Ser. 300: 117-128

Kiørboe T., Bagøien E. (2005) Motility patterns and mate encounter rates in planktonic copepods. Limnol. Oceanogr., 50(6): 1999-2007

Kiørboe, T, H.-P. Grossart, H. Ploug & K. Tang, 2002. Mechanisms and Rates of Bacterial Colonization of Sinking Aggregates. Appl. Environ. Microbiol., 68: 3996-4006

Kiørboe, T., K. Tang, H.-P. Grossart & H. Ploug, 2003. Dynamics of microbial communities on marine snow aggregates: colonization, growth, detachment and grazing mortality of attached bacteria. Appl. Environ. Microbiol. 69: 3036-3047 

Kiørboe, T., Grossart H.-P., PlougH., TangK., & Auer B. 2004. Particle associated flagellates: swimming patterns, colonization rates, and grazing on attached bacteria. Aquat. Microb. Ecol. 35: 141-152 

Koski, M, Kiørboe T. and Takahashi K. (2005). Benthic life in the pelagic: aggregate encounter and degradation rates by harpacticoid copepods. Limnol. Oceanogr. 50: 1254–1263 

Larsen M. H., Blackburn N., Larsen J. L., Olsen J. E. (2004 ): Influences of temperature, salinity and starvation on the motility and chemotactic response of Vibrio anguillarum. Microbiology (2004); Vol. 150, s. 1283-1290

Larsen M.H., Boesen H.T. (2001) Role of flagellum and chemotactic motility of Vibrio anguillarum for phagocytosis by and intracellular survival in fish macrophages. FEMS Microbiology Letters 203: 149

Michalec F.-G, Souissi S., Dur G., Mahjoub M.-S., Schmitt F.G., Hwang J.-S. (2010) Differences in behavioral responses of Eurytemora affinis (Copepoda, Calanoida) reproductive stages to salinity variations J. Plankton Res. (2010) 32(6): 805-813

Moldrup M. (2010) Making sense of protists – aspects of phototaxis and chemotaxis in protists. PhD thesis, Biological Institute, University of Copenhagen

Moison M., Schmitt F., Seuront L., Souissi S. (2007) Statistical analysis of copepod (Temora longicornis) swimming behaviour and trajectories and their environmental forcings. Geophysical Research Abstracts, Vol. 9, 04467

Seuront L. (2010) Zooplankton avoidance behaviour as a response to point sources of hydrocarbon-contaminated water. Marine and Freshwater Research 61(3) 263–270

Seuront L. (2011) Behavioral fractality in marine copepods: Endogenous rhythms versus exogenous stressors. Physica A 390 (2011) 250–256

Seuront L (2011) Hydrocarbon Contamination Decreases Mating Success in a Marine Planktonic Copepod. PLoS ONE 6(10): e26283. doi:10.1371/journal.pone.0026283

Seuront L., Leterme S.C.  (2007) Increased Zooplankton Behavioral Stress in Response to Short-Term Exposure to Hydrocarbon Contamination. The Open Oceanography Journal: 1-7

Seuront L., Vincent D. ( 2008) Increased seawater viscosity, Phaeocystis globosa spring bloom and Temora longicornis feeding and swimming behaviours. MEPS 363:131-145

Skovgaard A. (2000) A phagotrophically derivable growth factor in the plastidic dinoflagellate Gyrodinium resplendens (Dinophyceae). Journal of Phycology, 36: 1069-1078

Souissi S., Michalec F., Dur G., Mahjoub M., Schmitt F., Hwang  J.-S., (2001) Differences in behavioral responses of Eurytemora affinis (Copepoda, Calanoida) adults to salinity variations. Oxford University Press

Strom S.L., Wolfe G.V., Bright K.B. (2007) Responses of marine planktonic protists to amino acids: feeding inhibition and swimming behavior in the ciliate Favella sp. Aquat Microb Ecol 47: 107–121, 2007

Thar R., Blackburn N., Kühl M. (2000) A new system for three-dimensional tracking of motile microorganisms. Applied and Environmental Microbiology 66: 2238-2242 

Thar, R., and Fenchel, T. (2001) True chemotaxis in oxygen gradients of the sulfur-oxidizing bacterium Thiovulum majus. Applied and Environmental Microbiology 67: 3299-3303

Thar R., Kühl M. (2001) Motility of Marichromatium gracile in Response to Light, Oxygen, and Sulfide. Appl Environ Microbiol.; 67(12): 5410–5419

Titelman J. (2001) Swimming and escape behavior of copepod nauplii: implications for predator-prey interactions among copepods. Marine Ecology Progress Series 213: 203–213

Titelman J., Kiørboe T. (2003) Motility of copepod nauplii and implications for food encounter. Marine Ecology Progress Series 247: 123-135

Visser A.W, & Kiørboe T. (2006) Plankton motility patterns and encounter rates. Oecologia 148 (3): 538-546