Publications with Bioras references

The publications below are a partial list of references citing the Bioras software products LabTrack. If you would like to include your research paper to this list, please send the reference to


Angra A. (2011) Escape Behavior in Temora longicornis when exposed to Karenia brevis and Alexandrium fundyense. Undergraduate Thesis, Georgia Institute of Technology.

Amin R. Md., Koski M., Båmstedt U., Vidoudez C. (2011) Strain-related physiological and behavioral effects of Skeletonema marinoi on three common planktonic copepods. Marine Biology 158, Issue 9, pp 1965-1980

Bagøien, E. and T. Kiørboe (2005). Blind dating – mate finding in planktonic copepods. I. Tracking the pheromone trail of Centropages typicus. Mar. Ecol. Prog. Ser. 300: 105-115

Bagøien, E. and T. Kiørboe (2005). Blind dating – mate finding in planktonic copepods. III. Hydromechanica communication in Acartia tonsa. Mar. Ecol. Prog. Ser. 300:129-133

Bjærke, O., Andersen, T., Bækkedal, K. S., Nordbotten, M., Skau, L. F. and Titelman, J. (2015), Paternal energetic investments in copepods. Limnol. Oceanogr.. doi:10.1002/lno.10229

Blackburn N. (2003) “Measuring chemotaxis” in Madigan M.T., Martinko J.M., Parker J. (2003) Brock, Biology of Microorganisms.

Blackburn N., Fenchel T. (1999) Influence of bacteria, diffusion and shear on micro-scale nutrient patches, and implications for bacterial chemotaxis. Marine Ecology-Progress Series 189: 1-7

Blackburn N., Fenchel T., Mitchell J. (1998) Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria. Science 282: 2254-2256

Boakes D., Codling E.A., Thorn G.J.,  Steinke M. (2011) Analysis and modelling of swimming behaviour in Oxyrrhis marina. J. Plankton Res. 33 (4): 641-649.  doi:10.1093/plankt/fbq136

Chena M.-R., Moisonb M., Molinerob J.C., Hwanga J.-S. (2012) Assessing the effect of food and light on Calanus sinicus swimming behavior through video-recording experiments. Journal of Experimental Marine Biology and Ecology: 422–423, pp 14–19

Christensen-Dalsgaard K.K. & Tom Fenchel T. (2003) Increased filtration efficiency of attached compared to free-swimming flagellates. Aquat Microb Ecol 33: 77–86

Christensen-Dalsgaard K.K.; Fenchel T. (2004) Complex Flagellar Motions and Swimming Patterns of the Flagellates Paraphysomonas vestita and Pteridomonas danicaProtist, Volume 155, Number 1, 1 March 2004, pp. 79-87(9)

Diaz P. B., Wiech M., Heino M.,Utne-Palm A. C. (2015) Opposite selection on behavioural types by active and passive fishing gears in a simulated guppy Poecilia reticulata fishery. Journal of Fish Biology 86: 1095-8649. DOI: 10.1111/jfb.12620.

Dur G, Souissi S, Schmitt F, Cheng S-H, Hwang J-S (2010) The different aspects in motion of the three reproductive stages of /Pseudodiaptomus annandalei/ (Copepoda, Calanoida). J. Plankton Res. 32: 423-440

Dur G., Souissi S, Schmitt F., Beyrend-Dur D., Cheng S.H. & Hwang J.S. (2011) Mating and mate choice in Pseudodiaptomus annandalei (Copepoda, Calanoida). Journal of Experimental Marine Biology and Ecology. 402:1-11

Dur G., Souissi S., Schmitt F.G., Michalec F.-G, Mahjoub M.-S., Hwang J.-S. (2011) Effects of animal density, volume, and the use of 2D/3D recording on behavioral studies of copepods. Hydrobiologia. 666:197-214

Dur G., Souissi S., Schmitt F.G., Cheng S.-H., and Hwang J.-S. (2012) Sex Ratio and Mating Behavior in the Calanoid Copepod Pseudodiaptomus annandalei.Zoological Studies 51(5): 589-597

Fenchel T. (2004) Orientation in two dimensions: chemosensory motile behaviour of Euplotes vannus. European Journal of Protistology 40: 49–55 

Fenchel T., Blackburn N. (1999) Motile chemosensory behaviour of phagotrophic protists: Mechanisms for efficiency in congregating at food particles. Protist 150: 325-336

Fenchel, T. (2001) Eppur si muove: many water column bacteria are motile. Aquatic Microbial Ecology 24 197 – 201

Fenchel, T. (2001) How dinoflagellates swim. Protist 152 329 – 338

Gilbert D., Jakobsen H.H., Winding A., Mayer P. (2014) Co-Transport of Polycyclic Aromatic Hydrocarbons by Motile Microorganisms Leads to Enhanced Mass Transfer under Diffusive Conditions. Environ. Sci. Technol.48 (8), pp 4368–4375DOI: 10.1021/es404793u

Goetze E. (2008) Heterospecific mating and partial prezygotic reproductive isolation in the planktonic marine copepods Centropages typicus and Centropages hamatus. Limnology and oceanography vol. 53 (2): 433-445

Green, S., A.W. Visser, J. Titelman & T. Kiørboe, 2003. Escape responses of copepod nauplii in the flow field of the blue mussel, Mytilus edulisMar. Biol., 142: 727-733

Hale M., Mitchell J.G. (2001) Motion of Submicrometer Particles Dominated by Brownian Motion near Cell and Microfabricated Surfaces. Nano Letters 1 (11) 617–623

Hale M.S., Mitchell J.G. (2001) Functional morphology of diatom frustules microstructures: hydrodynamic control of Brownian particle diffusion and advection. Aquat Microb Ecol 24: 287–295

Hansen B.W., Jakobsen H.H., Andersen A., Almeda R., Pedersen T. M., Christensen A. M.,Nilsson B. (2010) Swimming behavior and prey retention of the polychaete larvae Polydora ciliate (Johnston) The Journal of Experimental Biology 213: 3237-3246

Hansson L.J., Kiørboe T. (2006) Prey-specific encounter rates and handling ambush-feeding hydromedusae. Limnol. Oceanogr., 51(4): 1849–1858

Heuschele J., Kiørboe T. (2012) The smell of virgins: mating status of females affects male swimming behaviour in Oithona davisae. J. Plankton Res. 34 (11): 929-935. doi: 10.1093/plankt/fbs054

Holste L. (2010) The Impact of Key Environmental Factors on the Vital Rates of two Baltic Sea Copepods. PhD thesis, University of Hamburg

Hsu C.-Y (2008) Analysis of interactive patterns between copepods and ciliates using indicators and data mining techniques. Master thesis, Marine Environment and Engineering, University of Taiwan

Jakobsen H.H., Halvorsen E., Winding Hansen B., Visser A.W. (2005) Effects of prey motility and concentration on feeding in Acartia tonsa and Temora longicornis: the importance of feeding modes. Journal of Plankton Research 27: 775-785

Jakobsen H.H., Everett L. M., Strom S. L. (2006) Hydromechanical signaling between the ciliate Mesodinium pulex and motile protist prey. Aquat Microb Ecol 44: 197–206

Johansen J.E., Pinhassi, J., Blackburn, N., Zweifel, U.L., Hagström Å. (2002) Viability in motility characteristics among marine bacteria. Aquatic Microbial Ecology 28: 229-237

Kjellerup S., Kiørboe T. (2011) Prey detection in a cruising copepod. Biol. Lett.: Marine biology. doi:10.1098/rsbl.2011.1073

Kiørboe T. (2007) Mate finding, mating, and population dynamics in a planktonic copepod Oithona davisae: There are too few males. Limnol. Ocean. 52: 1511–1522.     DOI: 10.4319/lo.2007.52.4.1511.

Kiørboe T. (2008) Optimal swimming strategies in mate-searching pelagic copepods. Oecologia 155: 179-192.

Kiørboe, T,. E. Bagøien and U.H. Thygesen (2005). Blind dating – mate finding in planktonic copepods. II. The pheromone cloud of Pseudocalanus elongatus. Mar. Ecol. Prog. Ser. 300: 117-128

Kiørboe T., Bagøien E. (2005) Motility patterns and mate encounter rates in planktonic copepods. Limnol. Oceanogr., 50(6): 1999-2007

Kiørboe, T, H.-P. Grossart, H. Ploug & K. Tang, 2002. Mechanisms and Rates of Bacterial Colonization of Sinking Aggregates. Appl. Environ. Microbiol., 68: 3996-4006

Kiørboe, T., K. Tang, H.-P. Grossart & H. Ploug, 2003. Dynamics of microbial communities on marine snow aggregates: colonization, growth, detachment and grazing mortality of attached bacteria. Appl. Environ. Microbiol. 69: 3036-3047 

Kiørboe, T., Grossart H.-P., PlougH., TangK., & Auer B. 2004. Particle associated flagellates: swimming patterns, colonization rates, and grazing on attached bacteria. Aquat. Microb. Ecol. 35: 141-152 

Koski, M, Kiørboe T. and Takahashi K. (2005). Benthic life in the pelagic: aggregate encounter and degradation rates by harpacticoid copepods. Limnol. Oceanogr. 50: 1254–1263 

Larsen M. H., Blackburn N., Larsen J. L., Olsen J. E. (2004 ): Influences of temperature, salinity and starvation on the motility and chemotactic response of Vibrio anguillarumMicrobiology (2004); Vol. 150, s. 1283-1290

Larsen M.H., Boesen H.T. (2001) Role of flagellum and chemotactic motility of Vibrio anguillarum for phagocytosis by and intracellular survival in fish macrophages. FEMS Microbiology Letters 203: 149

Lasley, R.S. (2012) Risk and resources in the plankton: effects on copepod population growth and zooplankton community dynamics. Dissertation Georgia Institute of Technology, Dept. of Biology. URI:

Lee M.-T.,  Hwang J.-S., Hsu C.-Y., Chang Y.-C. (2015) Combining a locomotion indicator and data mining to analyze the interactive patterns between copepods and ciliates. Ecological Informatics 26: 27–35. doi:10.1016/j.ecoinf.2015.01.001.

Mahjoub M.-S., Souissi S., Michalec F., Schmitt F-G. and Hwang J.-S. (2011) Swimming kinematics of Eurytemora affinis (Copepoda, Calanoida) reproductive stages and differential vulnerability to predation of larval Dicentrarchus labrax (Teleostei, Perciformes) J. Plankton Res. 33: 1095-1103 doi: 10.1093/plankt/fbr013

Michalec F.-G, Souissi S., Dur G., Mahjoub M.-S., Schmitt F.G., Hwang J.-S. (2010) Differences in behavioral responses of Eurytemora affinis (Copepoda, Calanoida) reproductive stages to salinity variations J. Plankton Res. (2010) 32(6): 805-813

Moldrup M. (2010) Making sense of protists – aspects of phototaxis and chemotaxis in protists. PhD thesis, Biological Institute, University of Copenhagen

Moldrup M., Garm A, (2012) Spectral sensitivity of phototaxis in the dinoflagellate Kryptoperidinium foliaceum and their reaction to physical encounters. The Journal of experimental biology 215 (13), 2342-2346

Moldrup, Morten M., Moestrup Ø., Hansen P. J. (2013)Loss of Phototaxis and Degeneration of an Eyespot in Long-term Algal Cultures: Evidence from Ultrastructure and Behaviour in the Dinoflagellate Kryptoperidinium foliaceum. J. Eukaryot. Microbiol.60: 1550-7408. DOI: 10.1111/jeu.12036.

Moison M., Schmitt F., Seuront L., Souissi S. (2007) Statistical analysis of copepod (Temora longicornis) swimming behaviour and trajectories and their environmental forcings. Geophysical Research Abstracts, Vol. 9, 04467

Moison M., Schmitt F.G., S Souissi S. (2012) Effect of temperature on Temora longicornis swimming behaviour: illustration of seasonal impa-effects in a temperate ecosystem. Aquat Biol. 16: 149–162. doi: 10.3354/ab00438

Nagel K.(2013)The effects of sympatric and allopatric hab species on calanoid copepod swimming behavior. Thesis from Georgia Institute of Technology, Dept. of Biology.

Péan S. (2012) Effects of persistent organic pollutants on fish behavior. Thesis from the Dept. de Sciences agricoles. Université de La Rochelle, 2012. Français.

Rogers, J.A. (2012) Developing Tools for Investigating Chemotaxis Signal Clusters in Bacillus subtilis. Thesis, University of Maryland, Cell Biology & Molecular Genetics.

Roswati Md Amin Md R., Koski M., Båmstedt U., Vidoudez C. (2011) Strain-related physiological and behavioral effects of Skeletonema marinoi on three common planktonic copepods. Marine Biology 158:1965.

Sabia L., Uttieri M., Pansera M., Souissi S, Schmitt F.G. (2012) First observations on the swimming behaviour of Pseudodiaptomus marinus from Lake Faro. Biol. Mar. Mediterr. (2012), 19 (1): 240-241

Seuront L. (2010) Zooplankton avoidance behaviour as a response to point sources of hydrocarbon-contaminated water. Marine and Freshwater Research 61(3) 263–270

Seuront L. (2010) How does salinity influence the swimming speed of the estuarine calanoid copepod Eurytemora affinis? Journal of Plankton Research 32: 1223 – 1225


Sabia L., Uttieri M., Schmitt F.G., Zagami G., Zambianchi E. & Souissi S. (2014)  Pseudodiaptomus marinus Sato, 1913, a new invasive copepod in Lake Faro (Sicily): observations on the swimming behaviour and the sex-dependent responses to food. Zoological Studies 53:49

Seuront L. (2011) Behavioral fractality in marine copepods: Endogenous rhythms versus exogenous stressors. Physica A 390 (2011) 250–256

Seuront L (2011) Hydrocarbon Contamination Decreases Mating Success in a Marine Planktonic Copepod. PLoS ONE 6(10): e26283. doi:10.1371/journal.pone.0026283

Seuront L. (2012) Hydrocarbon Contamination and the Swimming Behavior of the Estuarine Copepod Eurytemora affinis. In: Marine Ecosystems, Ch. 10. Antonio Cruzado A. (ed.), ISBN 978-953-51-0176-5, 322 pages, Publisher: InTech.

DOI: 10.5772/2131

Seuront L. (2013) Chemical and hydromechanical components of mate-seeking behaviour in the calanoid copepod Eurytemora affinis. J. Plankton Res. 35 (4): 724-743. doi: 10.1093/plankt/fbt039

Seuront L. & Bouchet V.M.P. (2015) The devil lies in details: new insights into the behavioural ecology of intertidal foraminifera. Journal of Foraminiferal Research, v. 45, no. 4, p. 390–401. DOI: 10.2113/gsjfr.45.4.390

Seuront L., Leterme S.C.  (2007) Increased Zooplankton Behavioral Stress in Response to Short-Term Exposure to Hydrocarbon Contamination. The Open Oceanography Journal: 1-7

Seuront L., Vincent D. ( 2008) Increased seawater viscosity, Phaeocystis globosa spring bloom and Temora longicornis feeding and swimming behaviours. MEPS 363:131-145

Skovgaard A. (2000) A phagotrophically derivable growth factor in the plastidic dinoflagellate Gyrodinium resplendens (Dinophyceae). Journal of Phycology, 36: 1069-1078

Souissi S., Michalec F., Dur G., Mahjoub M., Schmitt F., Hwang  J.-S., (2001) Differences in behavioral responses of Eurytemora affinis (Copepoda, Calanoida) adults to salinity variations. Oxford University Press

Strom S.L., Wolfe G.V., Bright K.B. (2007) Responses of marine planktonic protists to amino acids: feeding inhibition and swimming behavior in the ciliate Favella sp. Aquat Microb Ecol 47: 107–121, 2007

Thar R., Blackburn N., Kühl M. (2000) A new system for three-dimensional tracking of motile microorganisms. Applied and Environmental Microbiology 66: 2238-2242 

Thar, R., and Fenchel, T. (2001) True chemotaxis in oxygen gradients of the sulfur-oxidizing bacterium Thiovulum majus. Applied and Environmental Microbiology 67: 3299-3303

Thar R., Kühl M. (2001) Motility of Marichromatium gracile in Response to Light, Oxygen, and Sulfide. Appl Environ Microbiol.; 67(12): 5410–5419

Titelman J. (2001) Swimming and escape behavior of copepod nauplii: implications for predator-prey interactions among copepods. Marine Ecology Progress Series 213: 203–213

Titelman J., Kiørboe T. (2003) Motility of copepod nauplii and implications for food encounter. Marine Ecology Progress Series 247: 123-135

True A.C. (2011) Patchiness: Zooplankton behavior in finescale vertical shear layers. Thesis, Georgia Institute of Technology, Civil and Environmental Engineering

Uttieri M., Cianelli D., & Zambianchi E. (2013) Behaviour-dependent predation risk in swimming zooplankters. Zoological Studies 2013, 52:32

Visser A.W, & Kiørboe T. (2006) Plankton motility patterns and encounter rates. Oecologia 148 (3): 538-546

Wu C.-H., Dahms H.-U., Cheng S.-H., Hwang J.-S.  (20011) Effects of food and light on naupliar swimming behavior of Apocyclops royi and Pseudodiaptomus annandalei (Crustacea, Copepoda) Hydrobiologia , vol. 666, no. 1, pp. 167-178. DOI: 10.1007/s10750-011-0631-6

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