Publications with Bioras references
The publications below are a partial list of references citing the Bioras software products LabTrack. If you would like to include your research paper to this list, please send the reference to info@bioras.com
LabTrack
Angra A. (2011) Escape Behavior in Temora longicornis when exposed to Karenia brevis and Alexandrium fundyense. Undergraduate Thesis, Georgia Institute of Technology. http://hdl.handle.net/1853/38817
Amin R. Md., Koski M., Båmstedt U., Vidoudez C. (2011) Strain-related physiological and behavioral effects of Skeletonema marinoi on three common planktonic copepods. Marine Biology 158, Issue 9, pp 1965-1980
Bagøien, E. and T. Kiørboe (2005). Blind dating – mate finding in planktonic copepods. I. Tracking the pheromone trail of Centropages typicus. Mar. Ecol. Prog. Ser. 300: 105-115
Bagøien, E. and T. Kiørboe (2005). Blind dating – mate finding in planktonic copepods. III. Hydromechanica communication in Acartia tonsa. Mar. Ecol. Prog. Ser. 300:129-133
Bjærke, O., Andersen, T., Bækkedal, K. S., Nordbotten, M., Skau, L. F. and Titelman, J. (2015), Paternal energetic investments in copepods. Limnol. Oceanogr.. doi:10.1002/lno.10229
Blackburn N. (2003) “Measuring chemotaxis” in Madigan M.T., Martinko J.M., Parker J. (2003) Brock, Biology of Microorganisms.
Blackburn N., Fenchel T. (1999) Influence of bacteria, diffusion and shear on micro-scale nutrient patches, and implications for bacterial chemotaxis. Marine Ecology-Progress Series 189: 1-7
Blackburn N., Fenchel T., Mitchell J. (1998) Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria. Science 282: 2254-2256
Boakes D., Codling E.A., Thorn G.J., Steinke M. (2011) Analysis and modelling of swimming behaviour in Oxyrrhis marina. J. Plankton Res. 33 (4): 641-649. doi:10.1093/plankt/fbq136
Chena M.-R., Moisonb M., Molinerob J.C., Hwanga J.-S. (2012) Assessing the effect of food and light on Calanus sinicus swimming behavior through video-recording experiments. Journal of Experimental Marine Biology and Ecology: 422–423, pp 14–19
Christensen-Dalsgaard K.K. & Tom Fenchel T. (2003) Increased filtration efficiency of attached compared to free-swimming flagellates. Aquat Microb Ecol 33: 77–86
Christensen-Dalsgaard K.K.; Fenchel T. (2004) Complex Flagellar Motions and Swimming Patterns of the Flagellates Paraphysomonas vestita and Pteridomonas danica. Protist, Volume 155, Number 1, 1 March 2004, pp. 79-87(9)
Diaz P. B., Wiech M., Heino M.,Utne-Palm A. C. (2015) Opposite selection on behavioural types by active and passive fishing gears in a simulated guppy Poecilia reticulata fishery. Journal of Fish Biology 86: 1095-8649. DOI: 10.1111/jfb.12620. http://dx.doi.org/10.1111/jfb.12620
Dur G, Souissi S, Schmitt F, Cheng S-H, Hwang J-S (2010) The different aspects in motion of the three reproductive stages of /Pseudodiaptomus annandalei/ (Copepoda, Calanoida). J. Plankton Res. 32: 423-440
Dur G., Souissi S, Schmitt F., Beyrend-Dur D., Cheng S.H. & Hwang J.S. (2011) Mating and mate choice in Pseudodiaptomus annandalei (Copepoda, Calanoida). Journal of Experimental Marine Biology and Ecology. 402:1-11
Dur G., Souissi S., Schmitt F.G., Michalec F.-G, Mahjoub M.-S., Hwang J.-S. (2011) Effects of animal density, volume, and the use of 2D/3D recording on behavioral studies of copepods. Hydrobiologia. 666:197-214
Dur G., Souissi S., Schmitt F.G., Cheng S.-H., and Hwang J.-S. (2012) Sex Ratio and Mating Behavior in the Calanoid Copepod Pseudodiaptomus annandalei.Zoological Studies 51(5): 589-597
Fenchel T. (2004) Orientation in two dimensions: chemosensory motile behaviour of Euplotes vannus. European Journal of Protistology 40: 49–55
Fenchel T., Blackburn N. (1999) Motile chemosensory behaviour of phagotrophic protists: Mechanisms for efficiency in congregating at food particles. Protist 150: 325-336 http://www.sciencedirect.com/science/article/pii/S1434461099700337
Fenchel, T. (2001) Eppur si muove: many water column bacteria are motile. Aquatic Microbial Ecology 24 197 – 201 http://www.int-res.com/articles/ame/24/a024p197.pdf
Fenchel, T. (2001) How dinoflagellates swim. Protist 152 329 – 338
Gilbert D., Jakobsen H.H., Winding A., Mayer P. (2014) Co-Transport of Polycyclic Aromatic Hydrocarbons by Motile Microorganisms Leads to Enhanced Mass Transfer under Diffusive Conditions. Environ. Sci. Technol., 48 (8), pp 4368–4375. DOI: 10.1021/es404793u
Goetze E. (2008) Heterospecific mating and partial prezygotic reproductive isolation in the planktonic marine copepods Centropages typicus and Centropages hamatus. Limnology and oceanography vol. 53 (2): 433-445
Green, S., A.W. Visser, J. Titelman & T. Kiørboe, 2003. Escape responses of copepod nauplii in the flow field of the blue mussel, Mytilus edulis. Mar. Biol., 142: 727-733
Hale M., Mitchell J.G. (2001) Motion of Submicrometer Particles Dominated by Brownian Motion near Cell and Microfabricated Surfaces. Nano Letters 1 (11) 617–623
Hale M.S., Mitchell J.G. (2001) Functional morphology of diatom frustules microstructures: hydrodynamic control of Brownian particle diffusion and advection. Aquat Microb Ecol 24: 287–295
Hansen B.W., Jakobsen H.H., Andersen A., Almeda R., Pedersen T. M., Christensen A. M.,Nilsson B. (2010) Swimming behavior and prey retention of the polychaete larvae Polydora ciliate (Johnston) The Journal of Experimental Biology 213: 3237-3246
Hansson L.J., Kiørboe T. (2006) Prey-specific encounter rates and handling ambush-feeding hydromedusae. Limnol. Oceanogr., 51(4): 1849–1858
Heuschele J., Kiørboe T. (2012) The smell of virgins: mating status of females affects male swimming behaviour in Oithona davisae. J. Plankton Res. 34 (11): 929-935. doi: 10.1093/plankt/fbs054
Holste L. (2010) The Impact of Key Environmental Factors on the Vital Rates of two Baltic Sea Copepods. PhD thesis, University of Hamburg
Hsu C.-Y (2008) Analysis of interactive patterns between copepods and ciliates using indicators and data mining techniques. Master thesis, Marine Environment and Engineering, University of Taiwan
Jakobsen H.H., Halvorsen E., Winding Hansen B., Visser A.W. (2005) Effects of prey motility and concentration on feeding in Acartia tonsa and Temora longicornis: the importance of feeding modes. Journal of Plankton Research 27: 775-785
Jakobsen H.H., Everett L. M., Strom S. L. (2006) Hydromechanical signaling between the ciliate Mesodinium pulex and motile protist prey. Aquat Microb Ecol 44: 197–206
Johansen J.E., Pinhassi, J., Blackburn, N., Zweifel, U.L., Hagström Å. (2002) Viability in motility characteristics among marine bacteria. Aquatic Microbial Ecology 28: 229-237
Kjellerup S., Kiørboe T. (2011) Prey detection in a cruising copepod. Biol. Lett.: Marine biology. doi:10.1098/rsbl.2011.1073
Kiørboe T. (2007) Mate finding, mating, and population dynamics in a planktonic copepod Oithona davisae: There are too few males. Limnol. Ocean. 52: 1511–1522. DOI: 10.4319/lo.2007.52.4.1511.
Kiørboe T. (2008) Optimal swimming strategies in mate-searching pelagic copepods. Oecologia 155: 179-192. http://rsbl.royalsocietypublishing.org/content/early/2011/11/28/rsbl.2011.1073.full.pdf
Kiørboe, T,. E. Bagøien and U.H. Thygesen (2005). Blind dating – mate finding in planktonic copepods. II. The pheromone cloud of Pseudocalanus elongatus. Mar. Ecol. Prog. Ser. 300: 117-128
Kiørboe T., Bagøien E. (2005) Motility patterns and mate encounter rates in planktonic copepods. Limnol. Oceanogr., 50(6): 1999-2007
Kiørboe, T, H.-P. Grossart, H. Ploug & K. Tang, 2002. Mechanisms and Rates of Bacterial Colonization of Sinking Aggregates. Appl. Environ. Microbiol., 68: 3996-4006
Kiørboe, T., K. Tang, H.-P. Grossart & H. Ploug, 2003. Dynamics of microbial communities on marine snow aggregates: colonization, growth, detachment and grazing mortality of attached bacteria. Appl. Environ. Microbiol. 69: 3036-3047
Kiørboe, T., Grossart H.-P., PlougH., TangK., & Auer B. 2004. Particle associated flagellates: swimming patterns, colonization rates, and grazing on attached bacteria. Aquat. Microb. Ecol. 35: 141-152
Koski, M, Kiørboe T. and Takahashi K. (2005). Benthic life in the pelagic: aggregate encounter and degradation rates by harpacticoid copepods. Limnol. Oceanogr. 50: 1254–1263
Larsen M. H., Blackburn N., Larsen J. L., Olsen J. E. (2004 ): Influences of temperature, salinity and starvation on the motility and chemotactic response of Vibrio anguillarum. Microbiology (2004); Vol. 150, s. 1283-1290
Larsen M.H., Boesen H.T. (2001) Role of flagellum and chemotactic motility of Vibrio anguillarum for phagocytosis by and intracellular survival in fish macrophages. FEMS Microbiology Letters 203: 149
Lasley, R.S. (2012) Risk and resources in the plankton: effects on copepod population growth and zooplankton community dynamics. Dissertation Georgia Institute of Technology, Dept. of Biology. URI: http://hdl.handle.net/1853/44864
Lee M.-T., Hwang J.-S., Hsu C.-Y., Chang Y.-C. (2015) Combining a locomotion indicator and data mining to analyze the interactive patterns between copepods and ciliates. Ecological Informatics 26: 27–35. doi:10.1016/j.ecoinf.2015.01.001. http://www.sciencedirect.com/science/article/pii/S1574954115000096
Mahjoub M.-S., Souissi S., Michalec F., Schmitt F-G. and Hwang J.-S. (2011) Swimming kinematics of Eurytemora affinis (Copepoda, Calanoida) reproductive stages and differential vulnerability to predation of larval Dicentrarchus labrax (Teleostei, Perciformes) J. Plankton Res. 33: 1095-1103 doi: 10.1093/plankt/fbr013
Michalec F.-G, Souissi S., Dur G., Mahjoub M.-S., Schmitt F.G., Hwang J.-S. (2010) Differences in behavioral responses of Eurytemora affinis (Copepoda, Calanoida) reproductive stages to salinity variations J. Plankton Res. (2010) 32(6): 805-813
Moldrup M. (2010) Making sense of protists – aspects of phototaxis and chemotaxis in protists. PhD thesis, Biological Institute, University of Copenhagen
Moldrup M., Garm A, (2012) Spectral sensitivity of phototaxis in the dinoflagellate Kryptoperidinium foliaceum and their reaction to physical encounters. The Journal of experimental biology 215 (13), 2342-2346
Moldrup, Morten M., Moestrup Ø., Hansen P. J. (2013)Loss of Phototaxis and Degeneration of an Eyespot in Long-term Algal Cultures: Evidence from Ultrastructure and Behaviour in the Dinoflagellate Kryptoperidinium foliaceum. J. Eukaryot. Microbiol.60: 1550-7408. DOI: 10.1111/jeu.12036.
Moison M., Schmitt F., Seuront L., Souissi S. (2007) Statistical analysis of copepod (Temora longicornis) swimming behaviour and trajectories and their environmental forcings. Geophysical Research Abstracts, Vol. 9, 04467
Moison M., Schmitt F.G., S Souissi S. (2012) Effect of temperature on Temora longicornis swimming behaviour: illustration of seasonal impa-effects in a temperate ecosystem. Aquat Biol. 16: 149–162. doi: 10.3354/ab00438
Nagel K.(2013)The effects of sympatric and allopatric hab species on calanoid copepod swimming behavior. Thesis from Georgia Institute of Technology, Dept. of Biology.
Péan S. (2012) Effects of persistent organic pollutants on fish behavior. Thesis from the Dept. de Sciences agricoles. Université de La Rochelle, 2012. Français.
Rogers, J.A. (2012) Developing Tools for Investigating Chemotaxis Signal Clusters in Bacillus subtilis. Thesis, University of Maryland, Cell Biology & Molecular Genetics. http://hdl.handle.net/1903/13567
Roswati Md Amin Md R., Koski M., Båmstedt U., Vidoudez C. (2011) Strain-related physiological and behavioral effects of Skeletonema marinoi on three common planktonic copepods. Marine Biology 158:1965.
Sabia L., Uttieri M., Pansera M., Souissi S, Schmitt F.G. (2012) First observations on the swimming behaviour of Pseudodiaptomus marinus from Lake Faro. Biol. Mar. Mediterr. (2012), 19 (1): 240-241
Seuront L. (2010) Zooplankton avoidance behaviour as a response to point sources of hydrocarbon-contaminated water. Marine and Freshwater Research 61(3) 263–270
Seuront L. (2010) How does salinity influence the swimming speed of the estuarine calanoid copepod Eurytemora affinis? Journal of Plankton Research 32: 1223 – 1225
doi:10.1093/plankt/fbq040
Sabia L., Uttieri M., Schmitt F.G., Zagami G., Zambianchi E. & Souissi S. (2014) Pseudodiaptomus marinus Sato, 1913, a new invasive copepod in Lake Faro (Sicily): observations on the swimming behaviour and the sex-dependent responses to food. Zoological Studies 53:49
Seuront L. (2011) Behavioral fractality in marine copepods: Endogenous rhythms versus exogenous stressors. Physica A 390 (2011) 250–256
Seuront L (2011) Hydrocarbon Contamination Decreases Mating Success in a Marine Planktonic Copepod. PLoS ONE 6(10): e26283. doi:10.1371/journal.pone.0026283
Seuront L. (2012) Hydrocarbon Contamination and the Swimming Behavior of the Estuarine Copepod Eurytemora affinis. In: Marine Ecosystems, Ch. 10. Antonio Cruzado A. (ed.), ISBN 978-953-51-0176-5, 322 pages, Publisher: InTech.
DOI: 10.5772/2131
Seuront L. (2013) Chemical and hydromechanical components of mate-seeking behaviour in the calanoid copepod Eurytemora affinis. J. Plankton Res. 35 (4): 724-743. doi: 10.1093/plankt/fbt039
Seuront L. & Bouchet V.M.P. (2015) The devil lies in details: new insights into the behavioural ecology of intertidal foraminifera. Journal of Foraminiferal Research, v. 45, no. 4, p. 390–401. DOI: 10.2113/gsjfr.45.4.390
Seuront L., Leterme S.C. (2007) Increased Zooplankton Behavioral Stress in Response to Short-Term Exposure to Hydrocarbon Contamination. The Open Oceanography Journal: 1-7
Seuront L., Vincent D. ( 2008) Increased seawater viscosity, Phaeocystis globosa spring bloom and Temora longicornis feeding and swimming behaviours. MEPS 363:131-145
Skovgaard A. (2000) A phagotrophically derivable growth factor in the plastidic dinoflagellate Gyrodinium resplendens (Dinophyceae). Journal of Phycology, 36: 1069-1078
Souissi S., Michalec F., Dur G., Mahjoub M., Schmitt F., Hwang J.-S., (2001) Differences in behavioral responses of Eurytemora affinis (Copepoda, Calanoida) adults to salinity variations. Oxford University Press
Strom S.L., Wolfe G.V., Bright K.B. (2007) Responses of marine planktonic protists to amino acids: feeding inhibition and swimming behavior in the ciliate Favella sp. Aquat Microb Ecol 47: 107–121, 2007
Thar R., Blackburn N., Kühl M. (2000) A new system for three-dimensional tracking of motile microorganisms. Applied and Environmental Microbiology 66: 2238-2242
Thar, R., and Fenchel, T. (2001) True chemotaxis in oxygen gradients of the sulfur-oxidizing bacterium Thiovulum majus. Applied and Environmental Microbiology 67: 3299-3303
Thar R., Kühl M. (2001) Motility of Marichromatium gracile in Response to Light, Oxygen, and Sulfide. Appl Environ Microbiol.; 67(12): 5410–5419
Titelman J. (2001) Swimming and escape behavior of copepod nauplii: implications for predator-prey interactions among copepods. Marine Ecology Progress Series 213: 203–213
Titelman J., Kiørboe T. (2003) Motility of copepod nauplii and implications for food encounter. Marine Ecology Progress Series 247: 123-135
True A.C. (2011) Patchiness: Zooplankton behavior in finescale vertical shear layers. Thesis, Georgia Institute of Technology, Civil and Environmental Engineering. http://hdl.handle.net/1853/42925
Uttieri M., Cianelli D., & Zambianchi E. (2013) Behaviour-dependent predation risk in swimming zooplankters. Zoological Studies 2013, 52:32
Visser A.W, & Kiørboe T. (2006) Plankton motility patterns and encounter rates. Oecologia 148 (3): 538-546
Wu C.-H., Dahms H.-U., Cheng S.-H., Hwang J.-S. (20011) Effects of food and light on naupliar swimming behavior of Apocyclops royi and Pseudodiaptomus annandalei (Crustacea, Copepoda) Hydrobiologia , vol. 666, no. 1, pp. 167-178. DOI: 10.1007/s10750-011-0631-6